Alignoth: Create portable alignment plots from bam files

A tool for creating alignment plots from bam files. The generated vega-lite plots are written to stdout per default. An example of a generated plot can be seen here. The name alignoth is derived from the visualized alignments combined with the star alioth (usage of vega plots).

Introduction

Tabular datasets, prevalent across diverse scientific fields such as biology, physics, economics, and environmental science, stand as the primary outcomes of scientific investigations. Datavzrd aims to create a solution for reporting this data in a sharable format that is highly customizable and easy to use with simple configuration using the yaml syntax.

Example Report

Explore Datavzrd’s capabilities by checking out an example report online along with its corresponding config file.

• Installation Guide
  • Bioconda
  • Cargo
  • Source
• Usage
  • Arguments